PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004540.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NAC
Protein Properties Length: 285aa    MW: 32563.2 Da    PI: 6.1837
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004540.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.71.2e-49231571128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                            lppGfrFhPtdeel+v+yL +k+  +          +   +i++vd+yk+ePw+Lp+++  ++kewyfF++rd+ky++g+r+nr+t++
  Cse_sc004540.1_g050.1  23 LPPGFRFHPTDEELIVHYLSRKACPELnivnvA---QppsIIADVDLYKHEPWELPEMALFGTKEWYFFTPRDRKYPNGSRPNRVTRN 107
                            79********************88776564442...24448***************77667999************************ PP

                    NAM  81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gyWkatg dk+v sk   +  vg+kk Lvfy g+  kg kt+W+mheyrl
  Cse_sc004540.1_g050.1 108 GYWKATGADKPVNSKsdPNVIVGIKKALVFYAGKGVKGIKTNWIMHEYRL 157
                            **************8655566***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MQYNMRSTSV TTRVRDAEAE LNLPPGFRFH PTDEELIVHY LSRKACPELN IVNVAQPPSI  60
IADVDLYKHE PWELPEMALF GTKEWYFFTP RDRKYPNGSR PNRVTRNGYW KATGADKPVN  120
SKSDPNVIVG IKKALVFYAG KGVKGIKTNW IMHEYRLPTS NCATSNEHNT NATTPKLDDW  180
VLCRLYNKKN NPKEMIIPPQ DNNIQRSRDE LQRENTSDSF DSFANSDGEF SGTFEGEQSG  240
TGLAESSMPK DEHGDGSNWL ESFNLEDLHH YLEAMPPNHD TNMKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.14e-75NAC family protein