PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004578.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 158aa MW: 18028.3 Da PI: 7.9385

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004578.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	112.9	2.1e-35	26	125	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqql 87 aCaaC r+kCa++C+lapyfp+++ ++f+nv+klFG+s ++k++k+ +++e ++dam+s++yeA+arardP G+ +++ +l qq+ Cse_sc004578.1_g020.1 26 ACAACHSRRQKCAPGCILAPYFPHDRLQQFQNVRKLFGVSFITKTIKDHDDQEeKDDAMTSIIYEANARARDPAGGSSRILIELDQQI 113 7*********************************************9666659***************************** PP DUF260 88 eqlkaelallke 99 +++++el+ +k+ Cse_sc004578.1_g020.1 114 REAESELDIVKQ 125 *****99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence
MSNQNNHPNK NNNQLPPPRR KPSDPACAAC HSRRQKCAPG CILAPYFPHD RLQQFQNVRK 60 LFGVSFITKT IKDHDDQEEK DDAMTSIIYE ANARARDPAG GSSRILIELD QQIREAESEL 120 DIVKQLVALC KRIGLQKLHQ IINDQGFDLD HHHDQMGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	1e-31	LBD family protein