PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004788.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 244aa MW: 27302.7 Da PI: 6.3917

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004788.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.3	1.3e-13	58	104	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRRdriN +++Lr+l+ ++ K++Ka+ L k+ve++k+L Cse_sc004788.1_g030.1 58 KNHSEAEKRRRDRINAHLSTLRKLVSNS-----DKMDKATLLGKVVEHVKDL 104 78*********************997.....7**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence
MDNVFWSSWT QDGVSDQFNN WDHALLAPSV HQLSDSNYGG NNVGEWEDNK GAGSSASKNH 60 SEAEKRRRDR INAHLSTLRK LVSNSDKMDK ATLLGKVVEH VKDLKLEAKE LGKVFTIPTD 120 FDEVIIDHDS KTVSPCNNIL IKASVCCEDR AELFSEIKDA LNSLGLTMVE ADMTCLGGRI 180 ICNFILCLTN NTSENEVTSI KHSLKILLNR IVSTSSWTMS SNYRIKSKRQ RFFCSSSYDT 240 NGCE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	231	KSKRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-45	bHLH family protein