PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004803.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 246aa    MW: 26417.8 Da    PI: 8.5619
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004803.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.31.9e-41521511100
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdP+yG++g i++lqqq++
  Cse_sc004803.1_g050.1  52 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKIFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPIYGCMGAISALQQQIQ 139
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallkee 100
                            +l+++l+++++e
  Cse_sc004803.1_g050.1 140 SLQSDLNAVRAE 151
                            *******99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
LFYCGAVVRD FYDDAGKRIK REIDAYINTT AGQMGRRQIL IPPPGTLNTI TPCAACKLLR  60
RRCAEECPFS PYFSPHEPHK FAAVHKIFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL  120
RDPIYGCMGA ISALQQQIQS LQSDLNAVRA EILRYKYREA AANTHDINII ASTLVSSGPI  180
AASQLSSIPA PATPPPPQPS IVISSSSSSS SSSSSSSSVH LYGIPSSTSG YSTSTIPNNN  240
VSSYFA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.12e-75LBD family protein