PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004870.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family BBR-BPC
Protein Properties Length: 308aa    MW: 34708.9 Da    PI: 9.229
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004870.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind354.13.1e-10813081301
              GAGA_bind   1 mdddgsrernkg.yyepa.aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84 
                            mdd+g++ r+ g + +p+ + l +++   +q+m+++aerda+i+ernla+sekk a+aerd+a+lqrd+a+aern+a++erdn++++l
  Cse_sc004870.1_g050.1   1 MDDNGHH-RENGrQKQPQgQWLMQHQpsMKQIMTIMAERDAAIQERNLAMSEKKTALAERDIALLQRDSAIAERNNAIMERDNAIATL 87 
                            8898885.6666344444544444431145********************************************************** PP

              GAGA_bind  85 llvensla........salpvgvqvlsgtksidslqqlsepqle.dsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekk 163
                            +++en+++        s++p+g+q+++++k++++ qq  +++ + + + +++e+ k+ +++  ++++ ++    +kk++r++k k + 
  Cse_sc004870.1_g050.1  88 QYRENNSMsnsnnntsSSCPPGCQISRNVKHVHHPQQYLQEDANlPASPPAPEQAKSRKTKRPKETKAIT---GTKKTSRSRKVKLEC 172
                            ***999878999999999******************9333222202222234443333333222222222...222222333333222 PP

              GAGA_bind 164 akkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrr 251
                             +  +k   ++ ++   +++  + k+e+k++dl+ln+v++D++t+P+PvCsCtG+ r CYkWGnGGWqS+CCttt+SvyPLP  +++r
  Cse_sc004870.1_g050.1 173 DD-LNKVLYDDSHD-WDSGDGGSNKQEWKDQDLGLNQVTYDDTTMPIPVCSCTGVFRPCYKWGNGGWQSSCCTTTLSVYPLPSLPNKR 258
                            22.22222222222.222222569**************************************************************** PP

              GAGA_bind 252 gaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                            +aR++grKmS+++f+kl+++L++eG+dlsnpvDLk+hWAkHGtn+++ti+
  Cse_sc004870.1_g050.1 259 HARVGGRKMSGSVFNKLINRLSGEGHDLSNPVDLKEHWAKHGTNRYITIK 308
                            *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MDDNGHHREN GRQKQPQGQW LMQHQPSMKQ IMTIMAERDA AIQERNLAMS EKKTALAERD  60
IALLQRDSAI AERNNAIMER DNAIATLQYR ENNSMSNSNN NTSSSCPPGC QISRNVKHVH  120
HPQQYLQEDA NLPASPPAPE QAKSRKTKRP KETKAITGTK KTSRSRKVKL ECDDLNKVLY  180
DDSHDWDSGD GGSNKQEWKD QDLGLNQVTY DDTTMPIPVC SCTGVFRPCY KWGNGGWQSS  240
CCTTTLSVYP LPSLPNKRHA RVGGRKMSGS VFNKLINRLS GEGHDLSNPV DLKEHWAKHG  300
TNRYITIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-135BBR-BPC family protein