PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004892.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 449aa MW: 50599.2 Da PI: 8.7618

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004892.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	76	98	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H r H Cse_sc004892.1_g090.1 76 YICEVCHKGFQRDQNLQLHRRGH 98 89*******************88 PP
2	zf-C2H2	13.2	0.00026	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + Cse_sc004892.1_g090.1 153 WKCDKCSKRYAVQSDWKAHAKIC 175 58*****************9987 PP
3	zf-C2H2	11	0.0013	183	201	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + Cse_sc004892.1_g090.1 183 DCGTIFSRKDSFVTHRAFC 201 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MSNFVQDFDE DDEQFHSTRL SNGSPENGSI QPTTMASKKK RNLPGNPGKL RKPFLFYPDA 60 EVVALSPRTL MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRPAN IQVKKRVYIC 120 PEPNCVHHEP TRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HAKICGTREY 180 RCDCGTIFSR KDSFVTHRAF CDALAEENYR MNQKVIESPQ ANTNNMMRSE FSHDNSNHEK 240 PISNDFDPIL FNQRTLMRPC FISSSGEPNN SLMSAAAAPY TSATALLQKA AEMGSKVSDH 300 TITPILLRGF NGYSTTNTTF QSLDNSNTTN ATGLHQEPFS KNTSTVQSSG LYDSSLIMPS 360 SKGNNLMERQ VLSERMTVDF LGVEPSSICG KRDYDGSMIG IPYSNDQQSD WIYKALSIAM 420 DTLMLTISRG GCRCLPPVAR ATHGWVDEV

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MSNFVQDFDE DDEQFHSTRL SNGSPENGSI QPTTMASKKK RNLPGNPGKL RKPFLFYPDA  60
EVVALSPRTL MATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRPAN IQVKKRVYIC  120
PEPNCVHHEP TRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA HAKICGTREY  180
RCDCGTIFSR KDSFVTHRAF CDALAEENYR MNQKVIESPQ ANTNNMMRSE FSHDNSNHEK  240
PISNDFDPIL FNQRTLMRPC FISSSGEPNN SLMSAAAAPY TSATALLQKA AEMGSKVSDH  300
TITPILLRGF NGYSTTNTTF QSLDNSNTTN ATGLHQEPFS KNTSTVQSSG LYDSSLIMPS  360
SKGNNLMERQ VLSERMTVDF LGVEPSSICG KRDYDGSMIG IPYSNDQQSD WIYKALSIAM  420
DTLMLTISRG GCRCLPPVAR ATHGWVDEV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-103	C2H2 family protein