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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cse_sc004914.1_g060.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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| Family | HSF | ||||||||
| Protein Properties | Length: 485aa MW: 56665.1 Da PI: 7.0054 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 85.6 | 6.9e-27 | 12 | 104 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89
F+ kly++++d++++++isws++++sf+++de++f++++Lp+yF +s+f SF+ QL YgF+k+ ++ eF++k+F++g
Cse_sc004914.1_g060.1 12 FVIKLYKMVSDKDTNSIISWSSSSTSFIIFDEHRFTSEILPSYFNTSRFDSFTTQLYNYGFNKMGGRH---------LEFEQKHFQEG 90
9***************************************************************9998.........78********* PP
XXXXXXXXXXXXXX CS
HSF_DNA-bind 90 kkellekikrkkse 103
k++ll++ikr+ ++
Cse_sc004914.1_g060.1 91 KQHLLKTIKRRCKQ 104
**********9875 PP
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| 2 | HSF_DNA-bind | 94.6 | 1.1e-29 | 241 | 334 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88
Fl+kly+++e++el++lisw+ + +sf+++d+++fa++vLp yF hsnf+SF QLn+Y+Fkkv+ e+ e+++++F+
Cse_sc004914.1_g060.1 241 FLHKLYNMVEKQELDDLISWKlPKRDSFIIWDTNKFATHVLPMYFNHSNFSSFNSQLNIYEFKKVNWER---------HEYANEWFQG 319
9********************9999*****************************************999.........57******** PP
XXXXXXXXXXXXXXX CS
HSF_DNA-bind 89 gkkellekikrkkse 103
g+++ll++i r+ ++
Cse_sc004914.1_g060.1 320 GREDLLQNITRRPKK 334
***********9876 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 485 aa Download sequence |
METDEFHSVA RFVIKLYKMV SDKDTNSIIS WSSSSTSFII FDEHRFTSEI LPSYFNTSRF 60 DSFTTQLYNY GFNKMGGRHL EFEQKHFQEG KQHLLKTIKR RCKQSKVVNN TPSLCVATNE 120 FKATFSKVCV GQKQIFNRIQ RFKLDMEKTL SEVQNITESL SRNPIFTFSK DIGGKRKFGD 180 LDPRIVFADI EKYLKIFYNQ FEVPESGIDD FTTLSDLTQN VAIGRGVRGG RAGGGRRVPD 240 FLHKLYNMVE KQELDDLISW KLPKRDSFII WDTNKFATHV LPMYFNHSNF SSFNSQLNIY 300 EFKKVNWERH EYANEWFQGG REDLLQNITR RPKKQQRMDN TTTCTSAEME MFTHRLKTIQ 360 QEHKSKITWI SYSEEQMRSS VDGLKEMAVN MANIANKLTL KSIENLEHVK KAKLVIEVNG 420 IGNTEGQTLE VIELGEDQSA LEENNNDVAE SFFQQLEIDF DAVEKYLQMD ETWIVQREIM 480 HYMSA |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 95 | 101 | LKTIKRR |
| 2 | 228 | 236 | RGGRAGGGR |
| 3 | 229 | 235 | GGRAGGG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G54070.1 | 4e-20 | HSF family protein | ||||




