PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004943.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Nin-like
Protein Properties Length: 229aa    MW: 26787.7 Da    PI: 7.0875
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004943.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.72.7e-24121168552
                 RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            +++e+++++F++pi+ AAkeL+v+lT+LK++CR+++IkRWPhRk+ sl
  Cse_sc004943.1_g050.1 121 LEMEEIRMHFEMPIAMAAKELNVGLTILKKRCRELNIKRWPHRKLMSL 168
                            899******************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MDLLTNDQDL IDMDYWLHYF HLDDQLPFGD DTLFTWLDKQ SKDNISALEF SYFDPIVEDL  60
SLWDCFNSSL PLLCSKDDNT TQSHGSSGEA YSSSTTTITT CTTTATADHG DRSGRKRVRP  120
LEMEEIRMHF EMPIAMAAKE LNVGLTILKK RCRELNIKRW PHRKLMSLKC LIRNVKELGL  180
KEEVEMLEGQ KRMMEKQPEM EFNLRTKKLR QACFKATYKN KNRRFTSPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.14e-38Nin-like family protein