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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cse_sc004961.1_g030.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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| Family | bHLH | ||||||||
| Protein Properties | Length: 341aa MW: 38498.4 Da PI: 8.1597 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 31.1 | 4.1e-10 | 190 | 234 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h+++Er RR+ri +++ L+el+P++ K +Ka++L + +Y+k L
Cse_sc004961.1_g030.1 190 HSIAERLRRERIAERMRALQELVPSC-----NKTDKAAMLDEILDYVKFL 234
99***********************8.....6****************98 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 341 aa Download sequence |
MLSEVRVFQY HACYFPFPKI PFHFHPLFPS FFNHSFKQKQ ENKKRKRKKK MASDPPEGYG 60 DDFLEQILAI PSSYNNIDAS HPHHQQQQTV FPLGLSLDNG AQFTPTHQQQ QQQQQQRERG 120 GGNMNMSGLF PSAHHQFENN MHPSQQHSLL HTVPQAFQGQ PTTSTAVTVA HPPSIRPRVR 180 ARRGQATDPH SIAERLRRER IAERMRALQE LVPSCNKTDK AAMLDEILDY VKFLRLQVKV 240 LSMSRLGGAG AVAQLVSDVP LQSVEGDANE NGYNQPAWEN WSNDDTEREV AKLMEEDVGA 300 AMQFLQSKAL CIMPISLASL IYPTQQPDTS SLVKPEPSAP S |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 38 | 46 | QKQENKKRK |
| 2 | 43 | 48 | KKRKRK |
| 3 | 43 | 49 | KKRKRKK |
| 4 | 43 | 50 | KKRKRKKK |
| 5 | 44 | 50 | KKRKRKK |
| 6 | 45 | 49 | RKRKK |
| 7 | 195 | 200 | RLRRER |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G02590.3 | 1e-78 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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