PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005001.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 442aa MW: 46839.6 Da PI: 7.7699

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005001.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.7	1.6e-12	37	61	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++rtG+C yG+rC+F+H+ Cse_sc005001.1_g080.1 37 DEPDCIYYLRTGFCGYGSRCRFNHP 61 6899********************9 PP
2	zf-CCCH	37.2	4.9e-12	85	109	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ Cse_sc005001.1_g080.1 85 QPVCQYYMRTGMCKFGASCKYHHPR 109 689********************96 PP
3	zf-CCCH	35.4	1.8e-11	130	155	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Cse_sc005001.1_g080.1 130 GEKECSYYVKTGQCKFGVTCKFHHPQ 155 7899********************97 PP
4	zf-CCCH	37.4	4.2e-12	281	307	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p Cse_sc005001.1_g080.1 281 PGEPECQYYLKTGDCKFGSSCRYHHPP 307 5799*********************97 PP
5	zf-CCCH	34	5e-11	329	353	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a+ G Ck+G++CkF H++ Cse_sc005001.1_g080.1 329 APLCTHYAQKGVCKFGPSCKFDHPM 353 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MDTSQSDPVT QTGLQEPMWQ LGLGSGGGSE SYPERPDEPD CIYYLRTGFC GYGSRCRFNH 60 PTDRASSVVG AMRLSGGEYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPRQ GAGSSSTVPL 120 NASGYPLRPG EKECSYYVKT GQCKFGVTCK FHHPQPTAIM QAPLQPQAPP QESVSSIPSA 180 LYQSMQPPVP GNWPVARPST LPGSYFPGTY GPVLLPPGMV PYPGWNPYQA PVSPAASPST 240 VGAGPYYAMP PHLSPPGPSY AGSYLSMSSS TIKEQSFPQR PGEPECQYYL KTGDCKFGSS 300 CRYHHPPEWT VPNTNFVLSP MGLPLRPGAP LCTHYAQKGV CKFGPSCKFD HPMGTLSYSP 360 SASSLADMPV APYPVGSSIA TLAPSSSSSE LRPELISASS KDGLSTSMPS VSGGSSLSQS 420 MPLSESSGGS STTHGGDAPH SA

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MDTSQSDPVT QTGLQEPMWQ LGLGSGGGSE SYPERPDEPD CIYYLRTGFC GYGSRCRFNH  60
PTDRASSVVG AMRLSGGEYP ERIGQPVCQY YMRTGMCKFG ASCKYHHPRQ GAGSSSTVPL  120
NASGYPLRPG EKECSYYVKT GQCKFGVTCK FHHPQPTAIM QAPLQPQAPP QESVSSIPSA  180
LYQSMQPPVP GNWPVARPST LPGSYFPGTY GPVLLPPGMV PYPGWNPYQA PVSPAASPST  240
VGAGPYYAMP PHLSPPGPSY AGSYLSMSSS TIKEQSFPQR PGEPECQYYL KTGDCKFGSS  300
CRYHHPPEWT VPNTNFVLSP MGLPLRPGAP LCTHYAQKGV CKFGPSCKFD HPMGTLSYSP  360
SASSLADMPV APYPVGSSIA TLAPSSSSSE LRPELISASS KDGLSTSMPS VSGGSSLSQS  420
MPLSESSGGS STTHGGDAPH SA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-137	C3H family protein