PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005037.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 552aa    MW: 60432.5 Da    PI: 4.8281
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005037.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS450.89e-1381835461374
                   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                            lv++L++cAeav++++++la+al++++  la+ ++ +m ++a+yf+ ALa+r+++    +y    p++  e++  e l  +  f+e s
  Cse_sc005037.1_g010.1 183 LVHTLMACAEAVQQDNMKLADALVKHVGILAAAQAGAMGKVATYFAGALAQRIYK----IY----PQDGLETSCWEML--QMHFYESS 260
                            689***************************************************9....44....4444433333443..335***** PP

                   GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                            P+lkf+h+taNqaIlea+eg++rvH++Df+++qG+QWpaL+qaLa Rp+gpp +R+Tgvg+p+++++++l+++g++La++Ae++gv+f
  Cse_sc005037.1_g010.1 261 PYLKFAHFTANQAILEAFEGATRVHVVDFSLNQGMQWPALMQALALRPGGPPAFRLTGVGPPQPDNTDALQQVGWKLAQLAETIGVQF 348
                            **************************************************************************************** PP

                   GRAS 177 efnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                            ef+ +va++l+d++ ++L++kp   E++aVn+v+++hrll++++++++    vL+ +k ++Pk+v++veqe++hn++ Fl+rf eal+
  Cse_sc005037.1_g010.1 349 EFRGFVANSLADIDASMLDIKPseVEVVAVNSVFEMHRLLARPGTVDK----VLDSIKAMKPKIVTLVEQESNHNGAVFLDRFNEALH 432
                            **********************88899*************99999999....************************************ PP

                   GRAS 263 yysalfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                            yys++fdsl ++ l++  +++ ++++++lgr+i+n+va eg++r+erhetl +Wr r++++GF+pv+l+++a kqa++ll+ ++ +dg
  Cse_sc005037.1_g010.1 433 YYSTMFDSLeSSALSQPMSQDLVMSEVYLGRQICNIVASEGTDRVERHETLTQWRTRMNSSGFEPVHLGSNAFKQASMLLALFAgGDG 520
                            *********666778888********************************************************************** PP

                   GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                            yrvee++g+l+lgW++rpL+++SaWr
  Cse_sc005037.1_g010.1 521 YRVEENDGCLMLGWHTRPLIATSAWR 546
                            *************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    
MKRDRERKKD QNTSSSSSMH PTKAKEMNHS LPDSGGMDEL LEVLGYKVKS TDMADVAQKL  60
EQLEMVMGDD GVLQLSDTVH YNPSDLSGWV QSMLSELNTS CNDAVLGGEC SSGNMIGFGG  120
DKVAANNDPY DLSVIPGGAI YGSTTEESHK VKRMRSEDVN DMLPPESPRP VVLVDSQEAG  180
IRLVHTLMAC AEAVQQDNMK LADALVKHVG ILAAAQAGAM GKVATYFAGA LAQRIYKIYP  240
QDGLETSCWE MLQMHFYESS PYLKFAHFTA NQAILEAFEG ATRVHVVDFS LNQGMQWPAL  300
MQALALRPGG PPAFRLTGVG PPQPDNTDAL QQVGWKLAQL AETIGVQFEF RGFVANSLAD  360
IDASMLDIKP SEVEVVAVNS VFEMHRLLAR PGTVDKVLDS IKAMKPKIVT LVEQESNHNG  420
AVFLDRFNEA LHYYSTMFDS LESSALSQPM SQDLVMSEVY LGRQICNIVA SEGTDRVERH  480
ETLTQWRTRM NSSGFEPVHL GSNAFKQASM LLALFAGGDG YRVEENDGCL MLGWHTRPLI  540
ATSAWRPGGI ES
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein