PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005071.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

HD-ZIP

Protein Properties

Length: 248aa MW: 27814.1 Da PI: 8.4021

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005071.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	105	159	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee+F+ +++++ ++++ LA+ l+L rqV vWFqNrRa+ k Cse_sc005071.1_g020.1 105 RKKLRLTKAQSGLLEEAFKLQPTLNPKQKQNLARDLNLRPRQVEVWFQNRRARTK 159 78889************************************************98 PP
2	HD-ZIP_I/II	117.5	7.7e-38	105	194	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rl+k q+ lLEe F+ + +L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL++ev++Lr Cse_sc005071.1_g020.1 105 RKKLRLTKAQSGLLEEAFKLQPTLNPKQKQNLARDLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCKTLTDENQRLRQEVQQLR 192 69*************************************************************************************9 PP HD-ZIP_I/II 89 ee 90 ++ Cse_sc005071.1_g020.1 193 AQ 194 76 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
MGLHGFANTE IALELCLNSI SSMAKNTTTK EPNPSTNDHH LRPSLTLASS SDSCRRGSGS 60 FFSNASTVKR ERDVASEESE RIMENNTSGH EDGDHDEGDG GANNRKKLRL TKAQSGLLEE 120 AFKLQPTLNP KQKQNLARDL NLRPRQVEVW FQNRRARTKL KQTEVDCEYL KRCCKTLTDE 180 NQRLRQEVQQ LRAQKMSQPL YMQLPAAALT MCPSCEQIGD IDTNSATTKT SFTKPYFFNT 240 FTSSSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	162	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	4e-69	HD-ZIP family protein