PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005125.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 420aa    MW: 45757.2 Da    PI: 7.7472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005125.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-10425426
                           ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                           ++Cr+f+r G+C+yG+rCk+ H+
  Cse_sc005125.1_g060.1  4 VPCRNFQR-GFCQYGERCKYLHS 25
                           59******.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    
MPAVPCRNFQ RGFCQYGERC KYLHSNPQPK PNPFGFGSQS ATQNPRSNAQ PQQPNPFGFG  60
VQNNNQSGSK PNQFKPGDNK WSRFSQTNGG NSSAPQKQDN QQSAANHTCT DPQSCKRQIS  120
EDFEHEKPLW KLTCYGHSKY GPCDVIGDLS FEELRASAYD DAKRGTGIQS IVEKERTLLS  180
SKIIEFENLL RNPYTPPQSS TFATQNTFPG TSATVFPLTV QNNAPPSVSS FSQLGTNFNS  240
GFQMRPATPN NAFSQFSQFQ APTQMSNPAA PNNAFAQVNQ FQAPNQLSNA AVPNNAFAQV  300
SNPAAPNNPF GQLNQFQAPT QISNAPQKNA FAFGNPGLMG TQPSTQPSVS SFPATTTTFN  360
NAFSPAASTS PFNVAPAPVS IMQMPQNTNS NSDADKSIWF KDDWERGEIP EEAPPAEVIY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-72C3H family protein