PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005228.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 164aa    MW: 19171.2 Da    PI: 10.242
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005228.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.32.3e-24959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie++  r+v+fskRrng++KKA+EL vLCd++v   +fs t++lyeys+
  Cse_sc005228.1_g020.1  9 KRIEDNGSRHVSFSKRRNGLMKKAHELAVLCDVDVGCFVFSGTNRLYEYST 59
                           79***********************************************96 PP
2K-box30.31.7e-11671491698
                  K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            +l  e++++    e  +  qR+l   ++++ +  eL qLe+q++  l+ +R++K++l+l  ++ lqkk+++l++e++ L+++l
  Cse_sc005228.1_g020.1  67 KLASEHRNVCTADELTEMVQRQLEDHKVQQSDTTELWQLEKQIQPVLQLVRTRKTQLMLGAVKALQKKKNQLSKEKQVLEREL 149
                            556666666666666668899999999****************************************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MGRGKVELKR IEDNGSRHVS FSKRRNGLMK KAHELAVLCD VDVGCFVFSG TNRLYEYSTG  60
ERTVREKLAS EHRNVCTADE LTEMVQRQLE DHKVQQSDTT ELWQLEKQIQ PVLQLVRTRK  120
TQLMLGAVKA LQKKKNQLSK EKQVLERELR IIRPWFPTTV LFYV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.21e-37MIKC_MADS family protein