PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005271.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 623aa MW: 71175 Da PI: 9.5586

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005271.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	43.6	9.4e-14	80	167	10	91
FAR1 10 vGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 GF+++ s+++k+ r+g + ++ ++C++egk ++ + + ++k+ r+r+ tgC a++k+ ++ +gk+++ k++ HnH+l+ Cse_sc005271.1_g020.1 80 GGFEIKLSSQRKT-RSGFVQHKYLMCNREGKLRNINIDtlksqgNDKAIRNRNLRVTGCMARVKLDLDPvSGKYKLVKFNPRHNHTLC 166 59****99998.8899*********8887766788888899999***********************************9 PP FAR1 91 p 91 p Cse_sc005271.1_g020.1 167 P 167 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MVNIGEITCV QVFEGSVGSV CDAGSEVMSV DDVEGVRIVE EGLLAMNDAG DAERVRFIVE 60 DDIRSGEIDD ENETHVNGKG GFEIKLSSQR KTRSGFVQHK YLMCNREGKL RNINIDTLKS 120 QGNDKAIRNR NLRVTGCMAR VKLDLDPVSG KYKLVKFNPR HNHTLCPEVY RHLSKTERKM 180 VYSEKLFIMK AKTANIGATV AHHIYSSMKG YDLVHGQVMD FKNYFRELNC FIGEGDSQML 240 INKMENRKAY VPNFSFHYKV EDSELVALFW ADKVMKCNFE EFGDIISFDA TFRTNKLQKA 300 LQRDCMGYLD FDSMDSMPKL KTKLMIEKHA ALVYTRTIFL RVQTEINEGI WDFQIQNVQT 360 GDGCEITLIR DKNAGEYRTL YKEKKKGKSE AVEKPKAARV QAMYKVLRNL EDGSVVCTCR 420 HFLRFGFLCR HVFYVFKNND IEKILEKYIL RHWTRDIIPH NLRRNRNRYG EKNETIDRLT 480 NEATCLVDEC LHRLSNDEGK MAEFVEQIRT LKKKVDIAVP NPPSKKDDME KFIGVPKPKK 540 IDVNNPSGAK NKGGTREVRR KSEREKAIDA SLKPKRKCGE CGVKTNTHNK KTCPLGPKAI 600 AAAKAAAEIA AAKKSMNTLL QTK

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MVNIGEITCV QVFEGSVGSV CDAGSEVMSV DDVEGVRIVE EGLLAMNDAG DAERVRFIVE  60
DDIRSGEIDD ENETHVNGKG GFEIKLSSQR KTRSGFVQHK YLMCNREGKL RNINIDTLKS  120
QGNDKAIRNR NLRVTGCMAR VKLDLDPVSG KYKLVKFNPR HNHTLCPEVY RHLSKTERKM  180
VYSEKLFIMK AKTANIGATV AHHIYSSMKG YDLVHGQVMD FKNYFRELNC FIGEGDSQML  240
INKMENRKAY VPNFSFHYKV EDSELVALFW ADKVMKCNFE EFGDIISFDA TFRTNKLQKA  300
LQRDCMGYLD FDSMDSMPKL KTKLMIEKHA ALVYTRTIFL RVQTEINEGI WDFQIQNVQT  360
GDGCEITLIR DKNAGEYRTL YKEKKKGKSE AVEKPKAARV QAMYKVLRNL EDGSVVCTCR  420
HFLRFGFLCR HVFYVFKNND IEKILEKYIL RHWTRDIIPH NLRRNRNRYG EKNETIDRLT  480
NEATCLVDEC LHRLSNDEGK MAEFVEQIRT LKKKVDIAVP NPPSKKDDME KFIGVPKPKK  540
IDVNNPSGAK NKGGTREVRR KSEREKAIDA SLKPKRKCGE CGVKTNTHNK KTCPLGPKAI  600
AAAKAAAEIA AAKKSMNTLL QTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-16	FAR1 family protein