PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005308.1_g070.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28520.3 Da    PI: 9.0038
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005308.1_g070.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.81.1e-31959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s
  Cse_sc005308.1_g070.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59
                           79***********************************************96 PP
2K-box100.13.2e-33821739100
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            + e+++++ ++e+ +Lk+++e Lqr+qR+llGedL +L+ keL+qLe+qLe sl+kiRs+K++ +l+q+ elq+ke+ l e+nkaLrk
  Cse_sc005308.1_g070.1  82 QPENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLNTKELEQLEHQLEMSLRKIRSTKTQSMLDQLAELQRKEQVLAETNKALRK 169
                            678999********************************************************************************** PP

                  K-box  97 klee 100
                            klee
  Cse_sc005308.1_g070.1 170 KLEE 173
                            *987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSS  60
SSMVKTLEKY HSCSYGSLKG SQPENESQYN YHEYLRLKAR VEVLQRSQRN LLGEDLAPLN  120
TKELEQLEHQ LEMSLRKIRS TKTQSMLDQL AELQRKEQVL AETNKALRKK LEESAQEFPR  180
QMWDGGAQTI PYNPLPTHSD EFFQPLGLNS TMHNSYNGLR YNPIGSDEMN VSGDNANNPN  240
GLFPGWML
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.13e-96MIKC_MADS family protein