PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005371.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 229aa    MW: 26232.1 Da    PI: 9.8149
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005371.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.44.3e-2457107151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                            krie++  r+v+fskRrng++KKA+EL vLCd++v   +fs t++lyeys+
  Cse_sc005371.1_g030.1  57 KRIEDNGSRHVSFSKRRNGLMKKAHELAVLCDVDVGCFVFSGTNRLYEYST 107
                            79***********************************************96 PP
2K-box31.47.8e-121512173298
                  K-box  32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            +  qR+l   ++++ +  eL qLe+q++ +l+ +R++K+el+l  ++ lq+k+++l++e++ L+++l
  Cse_sc005371.1_g030.1 151 EMVQRQLEDHKVKQSDATELWQLEKQIQPALQLVRTRKTELMLGAVNALQEKKNQLSKEKQVLEREL 217
                            46788898999999999*********************************************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
STRKERDAVY GYTQALLTWS KTGKVVTLLT LEQRKKLVTK AQAPNKVSMG RGKVELKRIE  60
DNGSRHVSFS KRRNGLMKKA HELAVLCDVD VGCFVFSGTN RLYEYSTGES SMIKILTRYQ  120
DYKKTDEIVR RTACELASEH RDVCTADELT EMVQRQLEDH KVKQSDATEL WQLEKQIQPA  180
LQLVRTRKTE LMLGAVNALQ EKKNQLSKEK QVLERELLAA RLNESNVDS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.27e-41MIKC_MADS family protein