PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005421.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

GATA

Protein Properties

Length: 247aa MW: 27613.2 Da PI: 9.0474

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005421.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	57.1	2.4e-18	178	212	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gpdg+ktLCnaCG++y++ +l Cse_sc005421.1_g030.1 178 CKHCLSQKTPQWRAGPDGPKTLCNACGVRYKSGRL 212 *******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MDLCRNASVS GGFPATFQPE QQLLSPKHGS LDDLFSGHYM EECDINTEWL SIFVEDCLSS 60 SGSCIPINPQ STTSSAQGTT KPTTPEIKNT AQFGNTLSMH KLVVPCKARS KRKRSQFKGT 120 SPLCWSQQLL NQTYWLADSE LILPNKSTSH ESTKSEDYGH GRYKLVKHDE ETRQGKRCKH 180 CLSQKTPQWR AGPDGPKTLC NACGVRYKSG RLLPEYRPAK SPSFVSYKHS NSHKKVLEMR 240 MCSSSSC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	116	ARSKRKRSQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32890.1	3e-45	GATA family protein