PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005803.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 258aa    MW: 29459.9 Da    PI: 6.1727
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005803.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-1865118356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k+++++ eq+++Le+ Fe  +++  +++++LA+ lgL+ rqV +WFqNrRa++k
  Cse_sc005803.1_g050.1  65 KKRRLNLEQVKALEKSFELGNKLEPDRKRQLARALGLQPRQVAIWFQNRRARWK 118
                            4557899**********************************************9 PP
2HD-ZIP_I/II130.66e-4264156193
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrl+ eqvk+LE+sFe  +kLep+rK +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++d++k++n++L++++++L+
  Cse_sc005803.1_g050.1  64 EKKRRLNLEQVKALEKSFELGNKLEPDRKRQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYNVLKRQFDNIKADNDALKNHNKKLH 151
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelke 93 
                            ++l++
  Cse_sc005803.1_g050.1 152 AQLMA 156
                            *9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MSFLPPEPMF FGYEDPHHNP HHYQGVEPLM LSRSMSYNGR EGCEEINVGG DAETSDDEGS  60
QLGEKKRRLN LEQVKALEKS FELGNKLEPD RKRQLARALG LQPRQVAIWF QNRRARWKTK  120
QLEKDYNVLK RQFDNIKADN DALKNHNKKL HAQLMALKVQ ESNGIRAMMN LNKETEGSWS  180
NGSENSCEDN STIFYSQISN NIHSNSSIIG GLTPQYLLGQ PLNQTTVTGD EGFCNMLNVI  240
EDQPAFWAWP EAEPRNLP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113121RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-69HD-ZIP family protein