PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005809.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 165aa    MW: 18898.4 Da    PI: 4.487
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005809.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS117.61.6e-3610158223373
                   GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                             +d++L+++ksl+P++v++v++++d++s+s++ r++ ++++ +  fd+le+ lp++s +r  +E+  +g +i+n++  eg+er+er e
  Cse_sc005809.1_g020.1  10 SKDSFLEIIKSLNPRIVTIVDEDSDLGSSSLASRITTCFNFLWIPFDALETFLPKDSYQRLDYEAD-IGHKIENIIGFEGRERIERLE 96 
                            3599**************************************************************.********************* PP

                   GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            + +k ++r+++ GF +vp++e++ +++k ll +++  g+ ++ e++ +vl+Wk+++ v ++aW
  Cse_sc005809.1_g020.1  97 SGAKLSQRMRNLGFLSVPFGEDTISEVKFLLGEHA-SGWGMKTEEDMIVLTWKGHNSVYATAW 158
                            ***********************************.77888999999**************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    
MRYMPDIALS KDSFLEIIKS LNPRIVTIVD EDSDLGSSSL ASRITTCFNF LWIPFDALET  60
FLPKDSYQRL DYEADIGHKI ENIIGFEGRE RIERLESGAK LSQRMRNLGF LSVPFGEDTI  120
SEVKFLLGEH ASGWGMKTEE DMIVLTWKGH NSVYATAWFP YGFEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.19e-49GRAS family protein