PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005858.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 247aa MW: 28289.9 Da PI: 6.5882

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005858.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.5e-09	140	187	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ +L++l+P + + k + + +L ++Y++sLq Cse_sc005858.1_g090.1 140 SHSLAERMRREKINEKLRRLQDLVPGC---Y-KTMGMSVMLDVIINYVRSLQ 187 8*************************8...3.34666678888888888887 PP

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence
MNTELENFNS AEVNLHGFMP MSGDNFSDYH HRHQRSHPLS FMSLQDGTNA IENFNFFGDH 60 QSGPVYDHMN HFPITFGPQR DGMETRVESF MNSDPPPFGP GLIGETKGRG GKKRKKNDVR 120 DEKPREVVHV RAKRGEATDS HSLAERMRRE KINEKLRRLQ DLVPGCYKTM GMSVMLDVII 180 NYVRSLQNQI EFLSMKLSAA SMFYDFNSPE MDAMETMKGT NGHEAQVMER MVEGYGDPPC 240 FQSTWSL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	116	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	2e-55	bHLH family protein