PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005866.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 467aa MW: 51850.1 Da PI: 7.1593

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005866.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.3	3.3e-17	146	195	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Cse_sc005866.1_g070.1 146 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 195 78*****************......55**********************998 PP
2	AP2	43.1	1.1e-13	238	288	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Cse_sc005866.1_g070.1 238 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKCNG 288 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
MWDLNGFPDR RPCSSPADDE KEEDKKGKRV GSLSNSSSSA VVMEEDGVSD DVSKMFGFSN 60 SSWESDHRPV TRQFFPVDDS EVGSTISGGS SMVQPPAAHW FGVKFSHQSS SSNGVAGDGF 120 VGKSTTAAVI AQPFKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH 180 AAARAYDRAA IKFRGLEADI NFNLEDYEED LKQMSNLTKE EFVHVLRRQS TGFPRGSSKY 240 RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKA AVTNFDSSIY 300 ENDLNLTEGS SDKNNNDNVS SDHDLDLSLG GGSTPFNMKN NGEDGRFVRD RHCDSIQLGF 360 KNTALIGEAK SSQFLSHTVL ESYTNHHEVR GYKHFMRHGD PSIHHVMDPP NFNSLNHQFL 420 SSTMEGVTDL SVASYENNVN SNGPLLHQIY AKSAAASSGF PQQRFNI

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

MWDLNGFPDR RPCSSPADDE KEEDKKGKRV GSLSNSSSSA VVMEEDGVSD DVSKMFGFSN  60
SSWESDHRPV TRQFFPVDDS EVGSTISGGS SMVQPPAAHW FGVKFSHQSS SSNGVAGDGF  120
VGKSTTAAVI AQPFKKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ VYLGGFDTAH  180
AAARAYDRAA IKFRGLEADI NFNLEDYEED LKQMSNLTKE EFVHVLRRQS TGFPRGSSKY  240
RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEVEAARAYD KAAIKCNGKA AVTNFDSSIY  300
ENDLNLTEGS SDKNNNDNVS SDHDLDLSLG GGSTPFNMKN NGEDGRFVRD RHCDSIQLGF  360
KNTALIGEAK SSQFLSHTVL ESYTNHHEVR GYKHFMRHGD PSIHHVMDPP NFNSLNHQFL  420
SSTMEGVTDL SVASYENNVN SNGPLLHQIY AKSAAASSGF PQQRFNI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.1	1e-114	AP2 family protein