PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005914.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22478.4 Da    PI: 10.1132
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005914.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.81.2e-171559145
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                           kri+n++ r vt skR +g++KKA EL +LC++ +a+i f   gk
  Cse_sc005914.1_g010.1 15 KRINNERERAVTMSKRHKGLFKKACELATLCGVHIAIIFFTIGGK 59
                           79************************************9976665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MAKLPKRGRK KIEIKRINNE RERAVTMSKR HKGLFKKACE LATLCGVHIA IIFFTIGGKS  60
LSFGSPSIHS ILNKFLKINE VDEQPEYFIT QLANCNESRL QELNKHYNEI SEKLINERKR  120
GQILEKTPKG LFGGKAFEEC ISGLVIEKIV KLKFHLMELE KILKGNRESR CVCSSSNDDN  180
KVDLSKMEVP KDYLKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-20M-type_MADS family protein