PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005968.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

DBB

Protein Properties

Length: 396aa MW: 44972.3 Da PI: 5.9311

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005968.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	16.1	2.4e-05	3	43	4	37
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 r+C+ + + + +C+ + +lC +C ++ H+ H Cse_sc005968.1_g020.1 3 RYCEYCVNLRSVVYCKADAAYLCLSCDTKVHSAnplsnrhH 43 78****99*******************6577777744 PP
2	zf-B_box	19.2	2.6e-06	46	83	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Ht 38 +C+++++ ++ C d q+++C+ C l++Hk H+ Cse_sc005968.1_g020.1 46 LICDTCKRRPAYNLCYDHQKFMCRGCDLSQHKAslkHR 83 68*****************************8888886 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MDRYCEYCVN LRSVVYCKAD AAYLCLSCDT KVHSANPLSN RHHRTLICDT CKRRPAYNLC 60 YDHQKFMCRG CDLSQHKASL KHRKRVLNSY VGCPSARDLG VLWDFDLNQV VNGNVVLDYK 120 LGSTPSASKN TSVVGLETNV HIKEFYRRLQ GFPVLQQLVD LLKVESYDAD HTGCVTRCQE 180 HIVETDVDQF SQQLLFGGGP LDDPNMNLDP CSSPFTELNH IESETDEIDL QGDSFWQCKS 240 LIPSDQLWSQ NMQDIGVCEE PVSLDDLNMP DIDLTFRNFE DLFRIEQEPS IAGQNTSMDT 300 FVNNSESSPK KARYASQIMS FSHSRLSPES SSTVCIESGV SPSCGSLEQE SSNEDKNVQL 360 KDSKQGKCGY RKARSDTQRQ TKSQNWKFRK HLNFYV

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MDRYCEYCVN LRSVVYCKAD AAYLCLSCDT KVHSANPLSN RHHRTLICDT CKRRPAYNLC  60
YDHQKFMCRG CDLSQHKASL KHRKRVLNSY VGCPSARDLG VLWDFDLNQV VNGNVVLDYK  120
LGSTPSASKN TSVVGLETNV HIKEFYRRLQ GFPVLQQLVD LLKVESYDAD HTGCVTRCQE  180
HIVETDVDQF SQQLLFGGGP LDDPNMNLDP CSSPFTELNH IESETDEIDL QGDSFWQCKS  240
LIPSDQLWSQ NMQDIGVCEE PVSLDDLNMP DIDLTFRNFE DLFRIEQEPS IAGQNTSMDT  300
FVNNSESSPK KARYASQIMS FSHSRLSPES SSTVCIESGV SPSCGSLEQE SSNEDKNVQL  360
KDSKQGKCGY RKARSDTQRQ TKSQNWKFRK HLNFYV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	1e-28	CO-like family protein