PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc005974.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 339aa    MW: 37271.4 Da    PI: 7.6158
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc005974.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.2e-181462148
                           TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                           rg+WT+eEd++lvd++++ Gg+ +W++ ++  g+ R++k+c++rw +yl
  Cse_sc005974.1_g030.1 14 RGPWTQEEDDILVDYINKNGGPgNWSSLPKLAGLLRCGKSCRLRWTNYL 62
                           89*******************************99************97 PP
2Myb_DNA-binding53.94e-1768113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T+eE++l++++++ lG++ W+ Ia +++ gRt++++k+ w+++l
  Cse_sc005974.1_g030.1  68 RGPFTPEEEQLIIQLHAILGNR-WAEIAGRLP-GRTDNEIKNLWNTHL 113
                            89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MVRAPCCEKT GLKRGPWTQE EDDILVDYIN KNGGPGNWSS LPKLAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FTPEEEQLII QLHAILGNRW AEIAGRLPGR TDNEIKNLWN THLRKRLISM  120
GLDPQTHELS CLKGSAKRLP TSSSARHMAQ WESARLEAEA RLSMDSSASL LLPSPNRTTH  180
PDYILRVWHS EVGESFSNRK PAVCFSPASQ ASVSGTTSKM APKTEPELDT ELLCATRSEM  240
APKTEPVCFS PASQASLSGT TSVMAPKTEP VCFSPASQAS VSGTTSEMTP KTEPELNTEL  300
SCATRSDDCI TSYNGLTHPL SPSEMEDYKC FLISMGSKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.15e-98MYB family protein