PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc005983.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 596aa MW: 66266.1 Da PI: 7.4942

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc005983.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	318	340	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC f +G C++G++C+F H+ Cse_sc005983.1_g010.1 318 KLCFKFITSGSCPRGEKCHFRHD 340 68889999************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MSPPPPRILI SGDPRGNLNT LFKRVTSVNK STGPFDALLC VGQFFPDSSD QLEELTEYIE 60 GRKNIPLPTY FIGDYGAGAV KVLSATVKEK CNLGFKMDGL KVRDNLFWLK GSGKFTLHGL 120 SVAYLSGRKS SSGVMYGTYS QDDVDVLRAG ILNRASTSGV PPGISDSVGS DATVSELVAE 180 IKPRYHVAGT KGVFYAREPY MNADGLHVTR FLGLAAVGNA SKQSLNLYIL HDELVTSGFG 240 HDSQKFIHAI SPTPASSMSS AEISVKPPNT TLSPYTYVEK SANTHEAGKR SADDANDSQY 300 WRYDVSKRQK GGGDDSEKLC FKFITSGSCP RGEKCHFRHD MDAREQSMRG VCFEFLNKGK 360 CEKGEDCTYK HSLQEERSRS RECWFCLSSP NVESHLITSV GENYYCAIAK GPLVQDHVLI 420 LPIEHLPNTL SSPPECEVEL VKFQNSLKAY FKSHKKEVVF FEWVYIKTSH ANLQAIPVPV 480 NRASAVQDIF NLAAEKLGFK FMVSKCDQSS EGRKLLRAQY DGKCSLFYVE LPGGTILSHP 540 VEENEKFPVQ FGREVLAGLL NMADRADWRN CKLSKDEEIK MAERFKISFE EYDPNR

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MSPPPPRILI SGDPRGNLNT LFKRVTSVNK STGPFDALLC VGQFFPDSSD QLEELTEYIE  60
GRKNIPLPTY FIGDYGAGAV KVLSATVKEK CNLGFKMDGL KVRDNLFWLK GSGKFTLHGL  120
SVAYLSGRKS SSGVMYGTYS QDDVDVLRAG ILNRASTSGV PPGISDSVGS DATVSELVAE  180
IKPRYHVAGT KGVFYAREPY MNADGLHVTR FLGLAAVGNA SKQSLNLYIL HDELVTSGFG  240
HDSQKFIHAI SPTPASSMSS AEISVKPPNT TLSPYTYVEK SANTHEAGKR SADDANDSQY  300
WRYDVSKRQK GGGDDSEKLC FKFITSGSCP RGEKCHFRHD MDAREQSMRG VCFEFLNKGK  360
CEKGEDCTYK HSLQEERSRS RECWFCLSSP NVESHLITSV GENYYCAIAK GPLVQDHVLI  420
LPIEHLPNTL SSPPECEVEL VKFQNSLKAY FKSHKKEVVF FEWVYIKTSH ANLQAIPVPV  480
NRASAVQDIF NLAAEKLGFK FMVSKCDQSS EGRKLLRAQY DGKCSLFYVE LPGGTILSHP  540
VEENEKFPVQ FGREVLAGLL NMADRADWRN CKLSKDEEIK MAERFKISFE EYDPNR