PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006144.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 359aa MW: 40065.8 Da PI: 4.7896

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006144.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36	1.2e-11	76	98	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+ff +tG+Ck+G +CkF+H+ Cse_sc006144.1_g040.1 76 EDCSFFIKTGICKFGLKCKFNHP 98 78********************9 PP
2	zf-CCCH	27.5	5.5e-09	125	147	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+f+++ G CkyG C+F+H++ Cse_sc006144.1_g040.1 125 VPCKFYSA-GVCKYGQFCRFNHPK 147 59****.***********96 PP
3	zf-CCCH	32.3	1.7e-10	169	191	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+f++rtG C yG C+F H+ Cse_sc006144.1_g040.1 169 TECSFYMRTGMCDYGTYCRFDHP 191 68********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MVNTGDEGIK NKFFCDLERL FPQEPEVDGL VQDFQNVGLE SSQTDSSLHD SSDSGYNGDD 60 SNEDSNMQHP IRPHAEDCSF FIKTGICKFG LKCKFNHPVS TKYMDDCEIA NGNGVGSPSK 120 ILSDVPCKFY SAGVCKYGQF CRFNHPKSEA EKYPLELNVL GLPKRLGKTE CSFYMRTGMC 180 DYGTYCRFDH PDPIFVLHSE HESSVVKGES MCNHKEGLEL TDGGYVLHYS ETTQLNLSVP 240 MITADSFMYM YPNCVLDGYQ APECMEMWSS SSPPAVNFEN VEDYTEDTPK RETCVLNDVG 300 LPIRPGKNVC WNFKNLGLCK LGRTCAFDHP KKNSSAYGST SESLSSVRTQ ETQMSTAQG

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MVNTGDEGIK NKFFCDLERL FPQEPEVDGL VQDFQNVGLE SSQTDSSLHD SSDSGYNGDD  60
SNEDSNMQHP IRPHAEDCSF FIKTGICKFG LKCKFNHPVS TKYMDDCEIA NGNGVGSPSK  120
ILSDVPCKFY SAGVCKYGQF CRFNHPKSEA EKYPLELNVL GLPKRLGKTE CSFYMRTGMC  180
DYGTYCRFDH PDPIFVLHSE HESSVVKGES MCNHKEGLEL TDGGYVLHYS ETTQLNLSVP  240
MITADSFMYM YPNCVLDGYQ APECMEMWSS SSPPAVNFEN VEDYTEDTPK RETCVLNDVG  300
LPIRPGKNVC WNFKNLGLCK LGRTCAFDHP KKNSSAYGST SESLSSVRTQ ETQMSTAQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	3e-43	C3H family protein