PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006197.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C2H2
Protein Properties Length: 163aa    MW: 18851.9 Da    PI: 10.4747
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006197.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.51.2e-053557123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y+C+ C k F r  nL+ H r H
  Cse_sc006197.1_g010.1 35 YVCETCYKGFVREQNLQLHGRAH 57
                           9******************9988 PP
2zf-C2H214.97.7e-05108130123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC  C+k +    +Lk H++ +
  Cse_sc006197.1_g010.1 108 HKCDTCSKAYAAEVDLKAHLKIC 130
                            79******************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    
MQAQKMAPGS KSRKDPVTSQ VVAVSPDRLL DVRMYVCETC YKGFVREQNL QLHGRAHNFP  60
FTLRRNSSNE TKKGVSMPRV HLHRYNPSHD LGGLKKHYLR KHVTEKNHKC DTCSKAYAAE  120
VDLKAHLKIC GKKKHKCSCG MKFKKKYDLN LHMDHYCSAR RLN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.17e-39C2H2 family protein