PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006222.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 255aa MW: 28799.7 Da PI: 8.1328

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006222.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.8	3.3e-15	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W ++Ed++l ++++G ++W I++ g+ R++k+c++rw +yl Cse_sc006222.1_g040.1 13 KGVWNEDEDDKLRAFIQKYGHPNWCEIPKLAGLARSGKSCRLRWMNYL 60 799*******************************************97 PP
2	Myb_DNA-binding	45.9	1.3e-14	67	111	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g++T+eE++ +vd++ + G++ W+ a+ ++ gR+++++k++w+++l Cse_sc006222.1_g040.1 67 GNFTKEEQDVIVDLHSKIGNK-WSMMAAQLP-GRSDNEIKNYWHTHL 111 89*****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MRPPRFDKFG IKKGVWNEDE DDKLRAFIQK YGHPNWCEIP KLAGLARSGK SCRLRWMNYL 60 RPNVKHGNFT KEEQDVIVDL HSKIGNKWSM MAAQLPGRSD NEIKNYWHTH LKNRVNIEST 120 KIRNGQIESA EPSNANPVGC SMKISNSKMI QDEVGILLAV LSSNLPPSSS TRELSSSSGF 180 NNVAPSDVIP PRFCKQAGSF WTEPFLLDCE IHASSNQKIF SPLGSTNDLI CQASFQDNII 240 DDVPLWSTIE SYFLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	7e-50	MYB family protein