PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006236.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 223aa    MW: 25428.1 Da    PI: 8.361
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006236.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.12.4e-281059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n++ rqvtfskRrng+lKKA+EL +LCdaev viifsst+klye+ss
  Cse_sc006236.1_g040.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVIIFSSTNKLYEFSS 59
                           8***********************************************96 PP
2K-box68.52.2e-2378171899
                  K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                            +  ++ ++ + +q e+a Lk++++nL + +R+l+Ge+L  L +++Lq+Le+qLe+ l++iR  K+e+l+++i+el +k + +++en +
  Cse_sc006236.1_g040.1  78 QlaNSMSDVKLWQMEAAILKQKLQNLHEAHRQLMGEELCGLGVEDLQKLENQLETNLQRIRLEKEEMLTNEIQELTRKGNLIHQENIE 165
                            34467788999***************************************************************************** PP

                  K-box  94 Lrkkle 99 
                            L kk+ 
  Cse_sc006236.1_g040.1 166 LYKKIY 171
                            ***985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    
MGKGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVIIFSS TNKLYEFSST  60
SMKSAIQRYN RSKEENNQLA NSMSDVKLWQ MEAAILKQKL QNLHEAHRQL MGEELCGLGV  120
EDLQKLENQL ETNLQRIRLE KEEMLTNEIQ ELTRKGNLIH QENIELYKKI YEARAYAATC  180
DENSGFLACN SSVIQACSPT NLQLCQPELR GTLDMPLTAT RSW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-82MIKC_MADS family protein