PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006303.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 845aa    MW: 96379.8 Da    PI: 4.83
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006303.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS123.72.2e-3824253770369
                   GRAS  70 seknsseelaalklfsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgske 156
                            +++++ +  +a+++f+e++P+ +f+h+taN+aIleav  + + vHi+Dfd+s+G QWp+ ++a+a     + sl iT ++  ++++  
  Cse_sc006303.1_g040.1 242 KQESMRNFKTAFRAFYEIFPYGRFAHFTANSAILEAVPFHvDLVHIVDFDLSEGSQWPPVIEAIAHM---KKSLIITSIKL-DQDQDS 325
                            2334677888999*************************999************************95...567*******9.668999 PP

                   GRAS 157 eleetgerLakfAeelgvpfefnvl.vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvv 242
                            + e+t++ L +fA+++ ++++ + + +a+ ++++e ++L   + E +a n+++ l ++ + + +++  +  +v k+  +++  ++++ 
  Cse_sc006303.1_g040.1 326 QFEQTKRHLCNFARSFSLNLKVQEMeMAQIVKNMEGNKL---ESEFMAFNCMVGLPHMGRTRNTSQVmYFIKVAKAALDINEGILTFG 410
                            ***********************9844445666666666...69**************955544444355555666668********* PP

                   GRAS 243 eqe.adh..nsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
                            + e ++   + ++F   f + le y al++ +e +lp+   e+r+ +E  ++++ i    + e     ++  + ++    l++ G+k 
  Cse_sc006303.1_g040.1 411 DGEeCEKlrTFTDFSSFFDKNLERYKALYELIEWGLPSYLnEARMAMETLFVSPLI----SSESWL--QKWVEGRENMVSLKDIGLKG 492
                            97657765577899**********************99765889999999766655....455544..3333344457889******* PP

                   GRAS 327 vplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvs 369
                             pls++  ++++ l+++v+   g r+e  + +++vl W++ pLv 
  Cse_sc006303.1_g040.1 493 RPLSKESLNEVRELVKEVEsPYGIRIEgGNWNEMVLEWNGTPLVR 537
                            *******************88899999666799**********96 PP
2GRAS78.98.8e-256648122166
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                             +lL + A+a+s g+++la+ ++  +se  ++ g +++R+ + + ++  ++ ++           ++++     + ++a+++f+ ++P
  Cse_sc006303.1_g040.1 664 NNLLKAWADAISLGQKQLADVIVRCISEKINSIGAAIERISFNLFQGGDNQGNE---------YLKQEA---LRNFMQAFSAFYRIFP 739
                            6789999****************************************9999988.........233333...778999999******* PP

                   GRAS  90 ilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLa 166
                            + +f+h+taN+aIl+av  + e vHi+Dfdi +G QWp  ++a+a++     sl iT v+++e  +    eet+++L 
  Cse_sc006303.1_g040.1 740 YGQFAHFTANSAILQAVLAHvESVHIVDFDICEGSQWPLVIEAIAQQ---RKSLTITSVKQEE--HGFGFEETKRNLI 812
                            ****************99998************************96...457********66..7888888888875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MEAFDDVCKW LCDEDNQQMQ EIPIDSYVWS PSMSMNSSDA CAYVPYETQS SMCFTVSVVN  60
IDQWGLELVS RARFQTVVDH QGVDHSRRFN QADHSRGLIT AGGRSQEVKQ VDHSRRFKQV  120
DHCSRSLKGS RSRSLKLITR VLLGFDLSKK LIKVSNFRLG LLGQECFTVS VVNIDQWGLE  180
SQTGLQNLLM AYSEATGLGQ KELAKVIQNC VCRKASPVGL AIERLALNLF KCGENEGEEY  240
LKQESMRNFK TAFRAFYEIF PYGRFAHFTA NSAILEAVPF HVDLVHIVDF DLSEGSQWPP  300
VIEAIAHMKK SLIITSIKLD QDQDSQFEQT KRHLCNFARS FSLNLKVQEM EMAQIVKNME  360
GNKLESEFMA FNCMVGLPHM GRTRNTSQVM YFIKVAKAAL DINEGILTFG DGEECEKLRT  420
FTDFSSFFDK NLERYKALYE LIEWGLPSYL NEARMAMETL FVSPLISSES WLQKWVEGRE  480
NMVSLKDIGL KGRPLSKESL NEVRELVKEV ESPYGIRIEG GNWNEMVLEW NGTPLVRTPW  540
PIQSYFQSNL DHYESEHHEF PSSINSSPEY SLISSESYLP VLIDECVDYP FLGNDQTQNF  600
SLDEIDSQNN MVLDDVCKWL CDDDQVAEEI QSETSVKGED VWGPCLSMEE LNDVTEPEFQ  660
TGLNNLLKAW ADAISLGQKQ LADVIVRCIS EKINSIGAAI ERISFNLFQG GDNQGNEYLK  720
QEALRNFMQA FSAFYRIFPY GQFAHFTANS AILQAVLAHV ESVHIVDFDI CEGSQWPLVI  780
EAIAQQRKSL TITSVKQEEH GFGFEETKRN LIXDLRSKFE GTRERCHPND ARNGWTNKRC  840
RIFGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.13e-16GRAS family protein