PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006316.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 138aa    MW: 15930.1 Da    PI: 9.91
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006316.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.41.6e-2010104190
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeit..krtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 
                            ++Y++YAk++GF+vr  +++ sk+n+e +   + fvCskeg++   k     +++++r+ +++rt+Cka ++v+    + +  +++++
  Cse_sc006316.1_g010.1  10 QYYKDYAKRAGFEVRLGQQYISKKNKENIldLKYFVCSKEGTNPAPKAGalkKKSNSRKVSSKRTDCKAVFRVRHIPGKGYWCYDFVE 97 
                            69******************997776544125789*******99888777767778888899***************999999***** PP

                   FAR1  84 eHnHela 90 
                             HnH+l+
  Cse_sc006316.1_g010.1  98 GHNHSLV 104
                            *****97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    
MYHSLEQAYQ YYKDYAKRAG FEVRLGQQYI SKKNKENILD LKYFVCSKEG TNPAPKAGAL  60
KKKSNSRKVS SKRTDCKAVF RVRHIPGKGY WCYDFVEGHN HSLVSEEDSV FLVSSREVTY  120
TQQVFLYQAS QVNLGPVK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-10FAR1 family protein