PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006404.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 372aa MW: 42534.9 Da PI: 8.5372

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006404.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.7e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l +++++G +W+ +r g+ R++k+c++rw +yl Cse_sc006404.1_g040.1 14 KGAWSEDEDAKLRAYIERYGHSNWRELPRLAGLSRCGKSCRLRWMNYL 61 79********************************************97 PP
2	Myb_DNA-binding	25	4.3e-08	68	102	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+ T+eE++l+v +++++G++ ++ gR+++++k++w+ Cse_sc006404.1_g040.1 68 GNYTKEEEDLIVSLHNRFGNK--------LP-GRSDNEIKNHWH 102 789**************99.........***********7 PP
3	Myb_DNA-binding	35.7	2e-11	216	295	2	48
SSS-HHHHHHHHHHHHHTTTT..................................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..................................tWktIartmgkgRtlkqcksrwqkyl 48 g++T+eE++++vd ++++ ++ W+ a+ ++ gR+++++k++w+++l Cse_sc006404.1_g040.1 216 GNFTKEEQDIIVDIHRKHSNNlhplssallsgetsssphteypkddslrdyalsdLWSMMAAQLP-GRSDNEIKNYWHTHL 295 89*************************************************************.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MVRAPCFDKH GIKKGAWSED EDAKLRAYIE RYGHSNWREL PRLAGLSRCG KSCRLRWMNY 60 LRPNVKHGNY TKEEEDLIVS LHNRFGNKLP GRSDNEIKNH WHIHLKNRAP KAQPVFKIEQ 120 PEIPEPVVIN PKRYPVTKPS PSYSSISNYS SQCSLSVSDY EVSSDVTPQF SKPSEYSWIE 180 PYLANNNSVE SSSDSISGKS CRQRWMNYVR PNVKHGNFTK EEQDIIVDIH RKHSNNLHPL 240 SSALLSGETS SSPHTEYPKD DSLRDYALSD LWSMMAAQLP GRSDNEIKNY WHTHLKNRVN 300 RESTIMRNEH TEILEPSQAC VEGCSIKMSN LKTTQDEVMI LLAVLSSPSP SSFQQVKCHP 360 ANSVSQIMLL SL

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MVRAPCFDKH GIKKGAWSED EDAKLRAYIE RYGHSNWREL PRLAGLSRCG KSCRLRWMNY  60
LRPNVKHGNY TKEEEDLIVS LHNRFGNKLP GRSDNEIKNH WHIHLKNRAP KAQPVFKIEQ  120
PEIPEPVVIN PKRYPVTKPS PSYSSISNYS SQCSLSVSDY EVSSDVTPQF SKPSEYSWIE  180
PYLANNNSVE SSSDSISGKS CRQRWMNYVR PNVKHGNFTK EEQDIIVDIH RKHSNNLHPL  240
SSALLSGETS SSPHTEYPKD DSLRDYALSD LWSMMAAQLP GRSDNEIKNY WHTHLKNRVN  300
RESTIMRNEH TEILEPSQAC VEGCSIKMSN LKTTQDEVMI LLAVLSSPSP SSFQQVKCHP  360
ANSVSQIMLL SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-48	MYB family protein