PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006432.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 371aa MW: 40846.6 Da PI: 8.8538

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006432.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.1	7.2e-09	76	99	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++++rt tC G++CkF H+ Cse_sc006432.1_g010.1 76 EFDCPHYMRTRTCMLGGSCKFDHP 99 568********************9 PP
2	zf-CCCH	20.8	7e-07	127	151	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 C+ f+ CkyG +C+F+H++ Cse_sc006432.1_g010.1 127 KQVCPLFLVLNKCKYGQTCRFHHPK 151 56799999999************96 PP
3	zf-CCCH	19.8	1.4e-06	194	216	6	27
-SGGGGTS.--TTTTT-SS-SSS CS zf-CCCH 6 CrffartG.tCkyGdrCkFaHgp 27 C+ f tC++G++C F+H++ Cse_sc006432.1_g010.1 194 CKQFNMAArTCNFGSTCLFNHPK 216 788877777************96 PP
4	zf-CCCH	22.7	1.7e-07	269	292	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C+ ++++G C++G+ C F+H++ Cse_sc006432.1_g010.1 269 KNCNLYLKNGSCSFGSVCYFNHPE 292 78********************96 PP
5	zf-CCCH	18.2	4.3e-06	341	365	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + e C+++++ G C + +Ck+ H+p Cse_sc006432.1_g010.1 341 GKEKCKHYMKKGKCTF-KKCKYDHPP 365 7899**********.*****96 PP

Sequence ? help Back to Top
Protein Sequence Length: 371 aa Download sequence
MIYSHKDFTG TSYTPSGDYM DADATLADHK HSSSKASLGG NHNTVWQSEA CYSVNNSENL 60 RRCPSRFPVY HQMPGEFDCP HYMRTRTCML GGSCKFDHPL WVPEGGIPDS KEVSVTAIEP 120 LPERPGKQVC PLFLVLNKCK YGQTCRFHHP KEKVASLSDL EHTEGSELRK RPLKPLCKVF 180 AFLLVFNMSS LSTCKQFNMA ARTCNFGSTC LFNHPKHISR ATAGVDNGNG GQIGALTGGI 240 NEESTLSTPS STPAISLNSA GLPIRLGVKN CNLYLKNGSC SFGSVCYFNH PERDAMDPPG 300 AIVAAPASHI NHGLVNPALI SQTMVKKEHG SDSRIYRQRP GKEKCKHYMK KGKCTFKKCK 360 YDHPPRTSDA L

Sequence ? help Back to Top

Protein Sequence Length: 371 aa Download sequence

MIYSHKDFTG TSYTPSGDYM DADATLADHK HSSSKASLGG NHNTVWQSEA CYSVNNSENL  60
RRCPSRFPVY HQMPGEFDCP HYMRTRTCML GGSCKFDHPL WVPEGGIPDS KEVSVTAIEP  120
LPERPGKQVC PLFLVLNKCK YGQTCRFHHP KEKVASLSDL EHTEGSELRK RPLKPLCKVF  180
AFLLVFNMSS LSTCKQFNMA ARTCNFGSTC LFNHPKHISR ATAGVDNGNG GQIGALTGGI  240
NEESTLSTPS STPAISLNSA GLPIRLGVKN CNLYLKNGSC SFGSVCYFNH PERDAMDPPG  300
AIVAAPASHI NHGLVNPALI SQTMVKKEHG SDSRIYRQRP GKEKCKHYMK KGKCTFKKCK  360
YDHPPRTSDA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-69	C3H family protein