PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006477.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family bHLH
Protein Properties Length: 239aa    MW: 27144.5 Da    PI: 4.5079
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006477.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.5e-135092754
                           HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                             Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI+ L
  Cse_sc006477.1_g020.1 50 VSERNRRKKLNDRLFALRAVVPNiS------KMDKASIIKDAIDYIQTL 92
                           57*********************66......****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MENITDVNWE SILQTEDYSW GVLEETFSGC SDSSSPDGGQ SSSPASKNIV SERNRRKKLN  60
DRLFALRAVV PNISKMDKAS IIKDAIDYIQ TLHEQERTIL AELTELESQK SEPENFDFNQ  120
ETKFMSMEKS KKIRVEQAFD SSGSSSYPIE VQDLNVSYMG EKTVLVNLKC NKRRDTIVKL  180
CEVFESLKLK IVTATISSFS ERLFNTLFIQ TDEEDTDVLK IQLETAISTL NDPHSPMSM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168174LKCNKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-65bHLH family protein