PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006617.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family HD-ZIP
Protein Properties Length: 337aa    MW: 37472.6 Da    PI: 7.4669
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006617.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.83.3e-17173227256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ +++k q   Lee F+++++++ +++  LA++l+L  rqV vWFqNrRa+ k
  Cse_sc006617.1_g040.1 173 RKKLRLSKVQSAYLEESFKEHNTLNPKQKIALAERLNLRPRQVEVWFQNRRARTK 227
                            7788999**********************************************98 PP
2HD-ZIP_I/II123.11.4e-39173263192
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rlsk q++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+dye+Lkr++++l++en+rL ke +eLr
  Cse_sc006617.1_g040.1 173 RKKLRLSKVQSAYLEESFKEHNTLNPKQKIALAERLNLRPRQVEVWFQNRRARTKLKQTEVDYEYLKRCCETLTDENRRLYKELQELR 260
                            69*************************************************************************************9 PP

            HD-ZIP_I/II  89 eelk 92 
                             +lk
  Cse_sc006617.1_g040.1 261 -ALK 263
                            .555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    
MELGLSLGDT PPSNPTNQLT SKTTTSNSLG FCMALGMNPL NGSTHKPQAQ DCDDEDDDDH  60
EHSLKERRVG AQRITSLNPP VQLDLLPSGP VPRHTSFPWS SDNGSSEGGS SGNAAARKGL  120
TVVTEEATSS FRLDFMGYRR IGNNVNGDGK NDVVEVERAS SRASDEDDNG MSRKKLRLSK  180
VQSAYLEESF KEHNTLNPKQ KIALAERLNL RPRQVEVWFQ NRRARTKLKQ TEVDYEYLKR  240
CCETLTDENR RLYKELQELR ALKTTSNPFY MQRPATTLTM CPSCERVATT STVPTSTTLT  300
NNMDPSTNKT STTPQLTLSA TSRSLTPTTS QQQLPHE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172178SRKKLRL
2222230RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-78HD-ZIP family protein