PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc006661.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28236.4 Da    PI: 10.0079
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc006661.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.6e-29959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk+ rqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++
  Cse_sc006661.1_g030.1  9 KRIENKISRQVTFSKRRTGLLKKAHEISVLCDADVALIVFSTKGKLFEYAT 59
                           79***********************************************86 PP
2K-box95.21e-31821748100
                  K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                            + e++++ s++ e++kL+++ie L+++++h++Ge+Le+Lsl+eLq++eqq+e++lk+iR++Kn++++e+i++l kke++lqe+n++L+
  Cse_sc006661.1_g030.1  82 APETETQGSWTLESSKLRAKIEVLEKNIKHYVGEELEPLSLRELQSVEQQIETALKRIRTRKNQVMHESISDLHKKERALQEQNNTLS 169
                            456777899******************************************************************************* PP

                  K-box  96 kklee 100
                            kkl+e
  Cse_sc006661.1_g030.1 170 KKLKE 174
                            **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRTGLLK KAHEISVLCD ADVALIVFST KGKLFEYATH  60
SSMDAILERY ERYSYAEKLL TAPETETQGS WTLESSKLRA KIEVLEKNIK HYVGEELEPL  120
SLRELQSVEQ QIETALKRIR TRKNQVMHES ISDLHKKERA LQEQNNTLSK KLKENDKNIE  180
QRNAGFVLPP PQPQLPPPPP QPPHSLAPLI IGSGSFQGAA AIREDDPAQT HTMSATMMPA  240
WLLRHMNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-89MIKC_MADS family protein