PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc006946.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 578aa MW: 63230.6 Da PI: 9.3485

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc006946.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Cse_sc006946.1_g020.1 68 FICEVCNKGFQREQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	13.9	0.00016	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC++C+k + +s+ k H +t+ Cse_sc006946.1_g020.1 144 YKCEKCSKKYAVQSDWKAHSKTC 166 9******************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence
MAATSSSTSF FGARSEEEQH VSSIPTSSSA IQSAASQQKK KRSLPGTPNP DAEVIALSPK 60 TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVKRKVYL CPEPSCVHHE 120 PSRALGDLTG IKKHYSRKHG EKKYKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAQESA RHPSALGAIG SHLFGSHLSN SMNLGLSQVG SQMSQLHDQN 240 HQSSTTNMLS LGNSNFDQVM LQPSQTSLFP QPQMQSSSTP FFLSDPNQGL NQVFDYDQQS 300 QQHGLMANKP NIHALMQLPD LHNNTTKMSG NLFNLGFFSG SSNPNNGLKN SDNQNNDTNI 360 TSSGFMIPDH QYNTGGGSHD NNFVNNNNSR QENQTAAHMS ATALLQKAAQ MGSTTSNNNA 420 TTLLTSFGGS STIAVGGNLK SQTSHQNPSA TSFDVRADQT LQSNMENDNQ LQGLMNSLNS 480 GGVSSMFGGY NGNRNRNLNF RDTNDSGKFN HQNFSLSVGN SSKTTLDFLG VGYSQIEQQQ 540 QQQPQHPGRI NISSLDPKAD SSTHTSHVLG GSSKLQGN

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence

MAATSSSTSF FGARSEEEQH VSSIPTSSSA IQSAASQQKK KRSLPGTPNP DAEVIALSPK  60
TLMATNRFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKS NKEVKRKVYL CPEPSCVHHE  120
PSRALGDLTG IKKHYSRKHG EKKYKCEKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAQESA RHPSALGAIG SHLFGSHLSN SMNLGLSQVG SQMSQLHDQN  240
HQSSTTNMLS LGNSNFDQVM LQPSQTSLFP QPQMQSSSTP FFLSDPNQGL NQVFDYDQQS  300
QQHGLMANKP NIHALMQLPD LHNNTTKMSG NLFNLGFFSG SSNPNNGLKN SDNQNNDTNI  360
TSSGFMIPDH QYNTGGGSHD NNFVNNNNSR QENQTAAHMS ATALLQKAAQ MGSTTSNNNA  420
TTLLTSFGGS STIAVGGNLK SQTSHQNPSA TSFDVRADQT LQSNMENDNQ LQGLMNSLNS  480
GGVSSMFGGY NGNRNRNLNF RDTNDSGKFN HQNFSLSVGN SSKTTLDFLG VGYSQIEQQQ  540
QQQPQHPGRI NISSLDPKAD SSTHTSHVLG GSSKLQGN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-107	C2H2 family protein