PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc007134.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 182aa    MW: 21042 Da    PI: 9.3993
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc007134.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF762.9e-24959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie++  r+v+fskRrng++KKA+EL vLCd++v   +fs t++lyeys+
  Cse_sc007134.1_g020.1  9 KRIEDNGSRHVSFSKRRNGLMKKAHELAVLCDVDVGCFVFSGTNRLYEYST 59
                           79***********************************************96 PP
2K-box30.91.2e-111041703298
                  K-box  32 qreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            +  qR+l   ++++ +  eL qLe+q++ +l+ +R++K+el+l  ++ lq+k+++l++e++ L+++l
  Cse_sc007134.1_g020.1 104 EMVQRQLEDHKVKQSDATELWQLEKQIQPALQLVRNRKTELMLGAVKALQEKKNQLSKEKQVLEREL 170
                            56678888899999999*********************************************99886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    
MGRGKVELKR IEDNGSRHVS FSKRRNGLMK KAHELAVLCD VDVGCFVFSG TNRLYEYSTG  60
ESSMIKILTR YQDYKNTDEI VRRTVREKLA SEQKDVFTAD EITEMVQRQL EDHKVKQSDA  120
TELWQLEKQI QPALQLVRNR KTELMLGAVK ALQEKKNQLS KEKQVLEREL LAARLNESNV  180
DG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.22e-39MIKC_MADS family protein