PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007155.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 636aa MW: 69258.5 Da PI: 4.7669

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007155.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40.9	3.4e-13	299	321	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C++++rtG Ck+G++CkF+H+ Cse_sc007155.1_g010.1 299 EDCSYYMRTGMCKFGSNCKFNHP 321 89********************9 PP
2	zf-CCCH	23.3	1.1e-07	349	369	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C++f+ +G CkyG Ck++H Cse_sc007155.1_g010.1 349 ECKYFSSSGGCKYGKACKYNH 369 7******************** PP
3	zf-CCCH	39.3	1.1e-12	392	416	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Cse_sc007155.1_g010.1 392 GERECPYYMRNGSCKYGPNCRFNHP 416 5799********************9 PP
4	zf-CCCH	29.4	1.4e-09	539	565	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++++tG Cky +CkF+H++ Cse_sc007155.1_g010.1 539 PGQPDCSYYLKTGDCKYKVSCKFNHPR 565 5789*********************96 PP
5	zf-CCCH	32.6	1.4e-10	589	610	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++ r+G+CkyG+ Ck+ H+ Cse_sc007155.1_g010.1 589 VCSHYNRYGICKYGPACKYDHP 610 6********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MDTLQPNTQS DHTLIQALSQ ELETLVLSHD PLKEIRVFEE QDLDQKVRVL EKDEVLDMGF 60 LKGGGKCEDL GDLSGKDGIL KVGGGDHGDG LEGKDGVLVE NGSGNLENEN GGYGEKGENV 120 SSGEIVSYGS YGEKGENVSY GEKDENVSSV EIVSYGSYGE KGENVSYGEN VSYGEKGENV 180 SYGGYNEKGE NVSYGGYNEK GENISYGGYG EKGENVSYGG YGENVDGGYD GSYGEKGKNF 240 EHENVDGGGY DGNYGGYGGY GDGWEEGGSG NANNVVDGDD DDDEGGTRSY HYPLRPDAED 300 CSYYMRTGMC KFGSNCKFNH PLRKRNQGIK VTRKQKDENF ERHGAQQIEC KYFSSSGGCK 360 YGKACKYNHT KGKSALTPVL EYNFLGLPIR LGERECPYYM RNGSCKYGPN CRFNHPDPTT 420 GGTDGPATYG NDGHLPLQTA PQPNMPSWSA PRTPDPTAAY VPMMYSPPQN IPPPNSDWNG 480 YQAPAPVPVP VPALPHVYPS SERGLPIPPA FYLNNPPADT NLYTHHQQPM PVSDYPERPG 540 QPDCSYYLKT GDCKYKVSCK FNHPRNRIAK NTQSVLSDKG LPLRPDQLVC SHYNRYGICK 600 YGPACKYDHP VNYSSSGQQG YGQGGGSDGP LIQQSV

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MDTLQPNTQS DHTLIQALSQ ELETLVLSHD PLKEIRVFEE QDLDQKVRVL EKDEVLDMGF  60
LKGGGKCEDL GDLSGKDGIL KVGGGDHGDG LEGKDGVLVE NGSGNLENEN GGYGEKGENV  120
SSGEIVSYGS YGEKGENVSY GEKDENVSSV EIVSYGSYGE KGENVSYGEN VSYGEKGENV  180
SYGGYNEKGE NVSYGGYNEK GENISYGGYG EKGENVSYGG YGENVDGGYD GSYGEKGKNF  240
EHENVDGGGY DGNYGGYGGY GDGWEEGGSG NANNVVDGDD DDDEGGTRSY HYPLRPDAED  300
CSYYMRTGMC KFGSNCKFNH PLRKRNQGIK VTRKQKDENF ERHGAQQIEC KYFSSSGGCK  360
YGKACKYNHT KGKSALTPVL EYNFLGLPIR LGERECPYYM RNGSCKYGPN CRFNHPDPTT  420
GGTDGPATYG NDGHLPLQTA PQPNMPSWSA PRTPDPTAAY VPMMYSPPQN IPPPNSDWNG  480
YQAPAPVPVP VPALPHVYPS SERGLPIPPA FYLNNPPADT NLYTHHQQPM PVSDYPERPG  540
QPDCSYYLKT GDCKYKVSCK FNHPRNRIAK NTQSVLSDKG LPLRPDQLVC SHYNRYGICK  600
YGPACKYDHP VNYSSSGQQG YGQGGGSDGP LIQQSV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-102	C3H family protein