PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc007234.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22367.9 Da    PI: 10.3285
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc007234.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krienk  r+v+fskRr+g++KKA+EL vLCd++v + +fs+t++l eys+
  Cse_sc007234.1_g040.1  9 KRIENKGSRHVSFSKRRKGLMKKAHELAVLCDVDVGLFVFSETNRLNEYST 59
                           79***********************************************96 PP
2K-box14.71.2e-0680169998
                  K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                            ++ +  e+l  e++ +    e  +  qR+l   ++++ +  e  q+ +q++  l+ +R++K++l+l  ++ lq+k+k l++e++ L++
  Cse_sc007234.1_g040.1  80 VHRTVREKLASEHRDICTADELTEMVQRQLEDHKVQQSDATEHWQMVKQIQPVLQLVRTRKTQLMLGAVKALQEKKKLLSKEKQVLER 167
                            666667777777777777777777888999999999999999999*****************************************99 PP

                  K-box  97 kl 98 
                            ++
  Cse_sc007234.1_g040.1 168 EI 169
                            87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MGRGRVELKR IENKGSRHVS FSKRRKGLMK KAHELAVLCD VDVGLFVFSE TNRLNEYSTG  60
ESMIKILTRY QDYKNADEKV HRTVREKLAS EHRDICTADE LTEMVQRQLE DHKVQQSDAT  120
EHWQMVKQIQ PVLQLVRTRK TQLMLGAVKA LQEKKKLLSK EKQVLEREIL AARLSESNVD  180
GRGINIPTKV IFN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-33MIKC_MADS family protein