PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007243.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 198aa MW: 21770.8 Da PI: 7.2616

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007243.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.1	1.2e-37	13	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+k+Cv+apyf ++q + +fa+vhk+FGasn +kll ++p+++r da+ sl+yeA r+rdPvyG+v i++lqqq Cse_sc007243.1_g030.1 13 PCGACKFLRRKCVKSCVFAPYFDSNQvgTTHFAAVHKVFGASNASKLLLRVPPHRRLDAVVSLCYEALSRVRDPVYGCVTNIFTLQQQ 100 7*******************9999767******************************************************* PP DUF260 87 leqlkaelallkee 100 + +++aela+++++ Cse_sc007243.1_g030.1 101 VVNMEAELAYIRSR 114 *******98875 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MSNNNSNNGG VGPCGACKFL RRKCVKSCVF APYFDSNQVG TTHFAAVHKV FGASNASKLL 60 LRVPPHRRLD AVVSLCYEAL SRVRDPVYGC VTNIFTLQQQ VVNMEAELAY IRSRISMLQC 120 LPQLDLSRNS PELMSSSSVF SANSEPTTIE QTSLVAPRCP NNYTITSQEL EDCDLELLAQ 180 EFLAQYVHGV KDSPPSCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00210.1	1e-60	LBD family protein