PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007243.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 239aa MW: 25218.5 Da PI: 7.0374

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007243.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.9	7.9e-39	23	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +++yeA+ar+rdPv+G+v+++++lqqq+ Cse_sc007243.1_g080.1 23 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNFSKLLLHIPVHKRLDAVVTVCYEAQARIRDPVNGCVAHLFALQQQV 110 7*********************9989******************************************************** PP DUF260 88 eqlkaelallkee 100 ++l+ael++ +++ Cse_sc007243.1_g080.1 111 ANLQAELSYFRSH 123 *****998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence
MSANPSTSQT AGGGSSVASG SGPCGACKFL RRKCVAGCIF APYFDSEQGA AHFAAVHKVF 60 GASNFSKLLL HIPVHKRLDA VVTVCYEAQA RIRDPVNGCV AHLFALQQQV ANLQAELSYF 120 RSHLATLEVQ LPPPPPQVPT STAAFSIADL PITTSCLPAI YDLSVLFDPM IQSSSWSMQP 180 SSRLMDPDHQ FSGATTSTPS QHDSGGGGST GDLHELAREL LQRQSIGSSE ASALPPHSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	9e-72	LBD family protein