PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007446.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 374aa MW: 43033.4 Da PI: 4.794

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007446.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.7	7e-14	141	225	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmre.rgferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ e+ aL++ e+ + +r++l+ W+ev++k+++ + r+ +qC+++++ l+k+ykk+k+ + + + ++++++yf++++ Cse_sc007446.1_g010.1 141 WTEIETFALLDSWGERFVKRGRKSLRSEEWQEVADKVAQvSRIVRTDTQCRNRLDTLKKKYKKEKALLQHN-KYATTKWVYFKNMD 225 ***********************************66156799********************86.677779****97 PP

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence
MDETDGNSRY PSNYRVNHGL NSTHQPNVTV RNVPQIAGNY VDLDDDEEED DEEQEQEVDA 60 NGTIQQNGDN EDDDDTDDDN DGEDDRQNEN FNLHRHPKKR KLKSLLSSFE LVPRVPTPAP 120 LQVSPPTFKP SFGGRNALTD WTEIETFALL DSWGERFVKR GRKSLRSEEW QEVADKVAQV 180 SRIVRTDTQC RNRLDTLKKK YKKEKALLQH NKYATTKWVY FKNMDMLIAP TLEPQPGPLR 240 QPQSQSHPGS LRQPQPQVVY LNSPGNTVSE EGDDDDDDED SDVLPPKKPK IKENKANVGS 300 FKLLADSINR FSDVYEKIEN RKRKEMLELE KMRMDLFREL ELQKNQILER AHAELVKIRR 360 GEYQENGSAG NVSG

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence

MDETDGNSRY PSNYRVNHGL NSTHQPNVTV RNVPQIAGNY VDLDDDEEED DEEQEQEVDA  60
NGTIQQNGDN EDDDDTDDDN DGEDDRQNEN FNLHRHPKKR KLKSLLSSFE LVPRVPTPAP  120
LQVSPPTFKP SFGGRNALTD WTEIETFALL DSWGERFVKR GRKSLRSEEW QEVADKVAQV  180
SRIVRTDTQC RNRLDTLKKK YKKEKALLQH NKYATTKWVY FKNMDMLIAP TLEPQPGPLR  240
QPQSQSHPGS LRQPQPQVVY LNSPGNTVSE EGDDDDDDED SDVLPPKKPK IKENKANVGS  300
FKLLADSINR FSDVYEKIEN RKRKEMLELE KMRMDLFREL ELQKNQILER AHAELVKIRR  360
GEYQENGSAG NVSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	159	203	KRGRKSLRSEEWQEVADKVAQVSRIVRTDTQCRNRLDTLKKKYKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-40	Trihelix family protein