PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc007685.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 234aa MW: 26752.2 Da PI: 6.6154

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc007685.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.8	1.4e-36	10	108	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqql 87 aCaaC+++rr+C++dC+lapyfpa+qpk f+nvh+l+G+ n++k+l+++ ++e++e+am+s+ ye+++r+ Pv+G++g+i +l+q+l Cse_sc007685.1_g040.1 10 ACAACRFQRRRCSSDCPLAPYFPANQPKVFQNVHRLYGVGNMMKILNQIkDDEQKEEAMKSIKYESHIRQMYPVHGCHGTIVQLHQNL 97 7**********************************************555669***************************** PP DUF260 88 eqlkaelallk 98 ++ el++++ Cse_sc007685.1_g040.1 98 VEATRELQSVN 108 **9999876 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MTVKGGSRPA CAACRFQRRR CSSDCPLAPY FPANQPKVFQ NVHRLYGVGN MMKILNQIKD 60 DEQKEEAMKS IKYESHIRQM YPVHGCHGTI VQLHQNLVEA TRELQSVNMM LDAYKKKSKL 120 EREACYINNV DGQVVGGSSD WGTASMMNVG NDLGFFYDGL GDHNANEFKR RVTALQPSDW 180 DDEKKTINID SAKYKPRVDE FQFCNVEQGD GSPDYTEIMC RSFVDDHQDY ELKI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-31	LBD family protein