PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008014.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 353aa MW: 39026.5 Da PI: 6.5749

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008014.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.4e-12	115	155	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 g+W++eE e l ++ +++ + W++I++ ++ gR++k+c srw Cse_sc008014.1_g040.1 115 GPWSPEEGEVLENLMEKHDHN-WSLISKSIP-GRSGKSCWSRW 155 89***************88.*****.********* PP
2	Myb_DNA-binding	46	1.2e-14	161	202	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T eEde l+++++++G++ W++I++ ++ gR++k c +rw + Cse_sc008014.1_g040.1 161 PFTLEEDEMLKKLIEKHGPN-WSLISKSIP-GRSAKTCELRWKT 202 89**************77.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MDNVSQPSRG THSYSRDQLA PSWNALNKQD SSRMMIDSDN VQAFVGGEIG SQNIIYEGNS 60 SQAVGGVVNG QGPSISDMAR VLQSLIYSVS FSQSLAMLST SVIKRQKKDM DQIEGPWSPE 120 EGEVLENLME KHDHNWSLIS KSIPGRSGKS CWSRWSFVHR PFTLEEDEML KKLIEKHGPN 180 WSLISKSIPG RSAKTCELRW KTIWHSLKSH EDIENHWNLT LKRKGSSMTN EDLTISDHNI 240 FIQPPSVSDI NGGQRNSYLH DLTLRLALGG VSDQAPSIGD MAMETGSQNS VQQGNSSHEV 300 GGMVSGQAPS ISDMVRGNMS SGCTHSFSHD KSAPSWNALI KRDSSLMMTE SYN

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MDNVSQPSRG THSYSRDQLA PSWNALNKQD SSRMMIDSDN VQAFVGGEIG SQNIIYEGNS  60
SQAVGGVVNG QGPSISDMAR VLQSLIYSVS FSQSLAMLST SVIKRQKKDM DQIEGPWSPE  120
EGEVLENLME KHDHNWSLIS KSIPGRSGKS CWSRWSFVHR PFTLEEDEML KKLIEKHGPN  180
WSLISKSIPG RSAKTCELRW KTIWHSLKSH EDIENHWNLT LKRKGSSMTN EDLTISDHNI  240
FIQPPSVSDI NGGQRNSYLH DLTLRLALGG VSDQAPSIGD MAMETGSQNS VQQGNSSHEV  300
GGMVSGQAPS ISDMVRGNMS SGCTHSFSHD KSAPSWNALI KRDSSLMMTE SYN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-26	MYB family protein