PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008044.1_g080.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18398.7 Da    PI: 8.9817
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008044.1_g080.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.81.2e-121549741
                           HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
                 SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                           + r+v + kR++g++KK +EL +LCd++++++++ 
  Cse_sc008044.1_g080.1 15 RARKVCLKKRKAGLIKKMNELKILCDVDACLVMYE 49
                           5799****************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MTRPAVKYQF LLDPRARKVC LKKRKAGLIK KMNELKILCD VDACLVMYET PDAQAEVWPS  60
HSEALRVIEK FDEAKLVSPY PELDRQAFLQ KSIAKAERQL KKQKEKNAKL LMEICLNDIN  120
AVNGLNPEEL HGLCGALDNH LKLIDEAIDA KTLSVKGKEK MI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28700.11e-20M-type_MADS family protein