PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc008181.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 438aa MW: 49500.4 Da PI: 7.3499

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc008181.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	57.1	4.6e-18	97	146	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ g+WvAeIr p++ r+r++lg+++++e+Aa a+++a+ +g Cse_sc008181.1_g010.1 97 LYRGVRQRN-HGKWVAEIRLPCN---RTRVWLGTYDSPEMAAYAYDQAACLVRG 146 59**999.8*****965...4*******************987776 PP
2	AP2	61	2.6e-19	290	340	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ g+WvAeIr p++ r+r++lg+++++e+Aa a+++a++ l+ge Cse_sc008181.1_g010.1 290 LYRGVRQRN-HGKWVAEIRLPCN---RTRVWLGTYDSPEMAAYAYDQAANLLRGE 340 59**999.8*****965...4***********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 438 aa Download sequence
MDQYSTDSLC SDTYYINSQY SSPNFISRCT NSNTTDSVYS NYPPSPVFHP QSGSSVYLEE 60 RDQLFKLSEA LDSENKCTTS PYGVIDKSIN SYRKRKLYRG VRQRNHGKWV AEIRLPCNRT 120 RVWLGTYDSP EMAAYAYDQA ACLVRGENAR LNFCDEAQIG LIGDANKLNA IKTTVDNKIR 180 VAIRXDGFSG EDMGVLKLPT IPCFPPAIWF FGLPPTKRPV IHTVRSTIDS VYSNYPPSPV 240 FHPQSGSSVY LQQRDQLFKM SEALDSGNKF IVSPDGILDE SINSYRKRKL YRGVRQRNHG 300 KWVAEIRLPC NRTRVWLGTY DSPEMAAYAY DQAANLLRGE NARLNFCDEA QIGLIGDANK 360 LNVIKIAMDN KIRVAIKKEN CKKREVNNHV ANISGSYMDS PEDGFSGEDM GFDVTADNYF 420 LAGVPSYDPD LIWEILDN

Sequence ? help Back to Top

Protein Sequence Length: 438 aa Download sequence

MDQYSTDSLC SDTYYINSQY SSPNFISRCT NSNTTDSVYS NYPPSPVFHP QSGSSVYLEE  60
RDQLFKLSEA LDSENKCTTS PYGVIDKSIN SYRKRKLYRG VRQRNHGKWV AEIRLPCNRT  120
RVWLGTYDSP EMAAYAYDQA ACLVRGENAR LNFCDEAQIG LIGDANKLNA IKTTVDNKIR  180
VAIRXDGFSG EDMGVLKLPT IPCFPPAIWF FGLPPTKRPV IHTVRSTIDS VYSNYPPSPV  240
FHPQSGSSVY LQQRDQLFKM SEALDSGNKF IVSPDGILDE SINSYRKRKL YRGVRQRNHG  300
KWVAEIRLPC NRTRVWLGTY DSPEMAAYAY DQAANLLRGE NARLNFCDEA QIGLIGDANK  360
LNVIKIAMDN KIRVAIKKEN CKKREVNNHV ANISGSYMDS PEDGFSGEDM GFDVTADNYF  420
LAGVPSYDPD LIWEILDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64380.1	2e-31	ERF family protein