PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008230.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 321aa    MW: 36815.6 Da    PI: 6.8641
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008230.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.31.3e-161461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           rgrWT eEde l+++++  G g+W++ ++  g+ R++k+c++rw +yl
  Cse_sc008230.1_g040.1 14 RGRWTSEEDETLIKYIEANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                           8*******************************99************97 PP
2Myb_DNA-binding53.27e-1767112148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+ TteE+e++v++++  G++ W+ Ia+ ++ gRt++++k++w+++l
  Cse_sc008230.1_g040.1  67 RGNITTEEEEIIVKLHASIGNR-WSVIASQLP-GRTDNEIKNYWNSHL 112
                            7999******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
MGRAPCCEKE GLKRGRWTSE EDETLIKYIE ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRGDLKRGNI TTEEEEIIVK LHASIGNRWS VIASQLPGRT DNEIKNYWNS HLSRKIYRFL  120
RAKNSTPLAS VDITNILQMK RRTGRVRRSV AKKYNKNRVV TKIKSPPPST SNESTLKRLN  180
RETRDDQSIV SNVICMYNND TAVDHVGGIN LILEDIENQE LGPNEIGYQG DELMDIDAFL  240
ESGSMDSNGL LSLHDEQQIE KIFADLSVAC DRKNDKKDEI LSLSASHSLG FCSYKDHKEI  300
GFDDDMMLWM WEDDNLELHR Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-74MYB family protein