PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc008251.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 162aa    MW: 18816.8 Da    PI: 9.7168
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc008251.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.77.2e-24959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           k ie+  +r   fskRr+g++KKA+EL vLCda++ +i+fs ++klye+ss
  Cse_sc008251.1_g020.1  9 KYIEDVQRRRACFSKRRQGLMKKAHELAVLCDADIGLIVFSDSQKLYEFSS 59
                           579**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MARTSIDLKY IEDVQRRRAC FSKRRQGLMK KAHELAVLCD ADIGLIVFSD SQKLYEFSSS  60
DMTQIMMRYR IATQAPPLPP LDAQFDMSRR LEEKEAEIRS LKKKVMRLES EKKSLVEGLV  120
HNQPIWYHLE PSLTLSDEQG ISRLDNPKME FRSAITSRPS KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.41e-24MIKC_MADS family protein